G.M. Gyori, G. Venkatachalam, P.S. Thiagarajan, D. Hsu, and M.V. Clement. OpenComet: An automated tool for comet assay image analysisRedox Biology, 2(2):457–465, 2014.
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S.K. Palaniappan, B.M. Gyori, B. Liu, D. Hsu, and P.S. Thiagarajan. Statistical model checking based calibration and analysis of bio-pathway models. In Proc. Conf. on Computational Methods in Systems Biology, 2013.
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B. Liu, J. Zhang, P.Y. Tan, D. Hsu, A.M. Blom, B. Leong, S. Sethi, B. Ho, J.L. Ding, and P.S. Thiagarajan. A computational and experimental study of the regulatory mechanisms of the complement systemPloS Computational Biology, 7(1), 2011.
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B. Liu, D. Hsu, and P. S. Thiagarajan. Probabilistic approximations of ODEs-based bio-pathway dynamicsTheoretical Computer Science, 412(21):2188-2206, 2011.
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G. Koh, D. Hsu, and P. S. Thiagarajan. Component-based construction of bio-pathway models: The parameter estimation problemTheoretical Computer Science, 412(26):2840–2853, 2011.
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G. Koh, D. Hsu, and P.S. Thiagarajan. Incremental signaling pathway modeling by data integration. In Proc. ACM Int. Conf. on Computational Biology (RECOMB), 2010.
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B. Liu, P.S. Thiagarajan, and D. Hsu . Probabilistic approximations of signaling pathway dynamics. In Proc. Conf. on Computational Methods in Systems Biology, 2009.
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B. Liu, P.S. Thiagarajan, and D. Hsu. Probabilistic approximations of bio-pathway dynamics. In ACM Int. Conf. on Computational Biology (RECOMB) Poster Book, 2009.
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G. Koh, D. Hsu, and P.S. Thiagarajan. Composition of signaling pathway models and its application to parameter estimation. In ACM Int. Conf. on Computational Biology (RECOMB) Poster Book, 2008.
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G. Koh, L. Tucker-Kellogg, D. Hsu, and P.S. Thiagarajan. Globally consistent pathway parameter estimates through belief propagationIn Proc. Workshop on Algorithms in Bioinformatics (WABI), 2007.
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G. Koh, H.F.C. Teong, M.-V. Clément, D. Hsu, and P.S. Thiagarajan. A decompositional approach to parameter estimation in pathway modeling: A case study of the Akt and MAPK pathways and their crosstalkBioinformatics, 22(14):271–280, 2006. Special issue on Int. Conf. on Intelligent Systems for Molecular Biology (ISMB) 2006.
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